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Synthesize Bio MCPmodel context protocol

5 available actions

What your AI agent can do in Synthesize Bio MCP

Synthesize Bio MCP lets agents start and monitor bulk or single-cell gene-expression analyses from natural-language experiment requests. This page lists every available action. Your agent only receives the actions and permissions required for the role you approve.

  • Get analysis resultsPolls the status of a gene expression analysis.
  • Get counts data urlReturns a presigned S3 URL to download the raw gene expression counts data (JSON) produced by a completed or in-progress analysis job.
  • Get metadata schemaReturns the structured-metadata schema used to turn a natural-language experiment description into sample groups.
  • Analyze gene expressionStarts a differential gene expression analysis using Synthesize Bio's AI platform.
  • Resolve sample metadataDeterministically harmonizes already-structured sample to Synthesize Bio's controlled ontology vocabulary.
Available actions
5
Connection
OAuth sign-in
Access
Scoped to the role
Control
Revocable by you

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